BioInfo bibliography

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2013
Silbiger VN, Luchessi AD, Hirata RDC, et al. "Novel genes detected by transcriptional profiling from whole-blood cells in patients with early onset of acute coronary syndrome: Transcriptional profiling of acute coronary syndrome." Clin. Chim. Acta. 2013. Abstract
Sánchez-Tena S, Lizarraga D, Miranda A, et al. "Grape antioxidant dietary fiber (GADF) inhibits intestinal polyposis in ApcMin/+ mice: relation to cell cycle and immune response." Carcinogenesis. 2013. Abstract
Galan A, Diaz-Gimeno P, Poo ME, et al. "Defining the Genomic Signature of Totipotency and Pluripotency during Early Human Development." PLoS ONE. 2013;8(4):e62135. Abstract
Sánchez-Tena S, Reyes-Zurita FJ, Díaz-Moralli S, et al. "Maslinic Acid-Enriched Diet Decreases Intestinal Tumorigenesis in Apc(Min/+) Mice through Transcriptomic and Metabolomic Reprogramming." PLoS ONE. 2013;8(3):e59392. Abstract
García-García F, Montaner D. Docencia en Estadística: Experiencias de Innovación. Vol. 1.; 2013. Download: Babelomics_2013.pdf (2.13 MB)
Gonzalez CY, Bleda M, Salavert F, Sánchez R, Dopazo J, Medina I. "Multicore and Cloud-Based Solutions for Genomic Variant Analysis." Lecture Notes in Computer Science. 2013;7640:273-284. Abstract  Download: PDF (635.97 KB)
2012
García-Alcalde F, Okonechnikov K, Carbonell J, et al. "Qualimap: evaluating next-generation sequencing alignment data." Bioinformatics. 2012;28(20):2678-9. Abstract
Carrero R, Cerrada I, Lledó E, et al. "IL1β Induces Mesenchymal Stem Cells Migration and Leucocyte Chemotaxis Through NF-κB." Stem cell reviews. 2012;8:905-916. Abstract
Salavert Torres J, Blanquer Espert I, Tomas Dominguez A, et al. "Using GPUs for the Exact Alignment of Short-read Genetic Sequences by Means of the Burrows--Wheeler Transform." IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM. 2012;9:1245-1256. Abstract
Rizza S, Conesa A, Juarez J, et al. "Microarray analysis of Etrog citron (Citrus medica L.) reveals changes in chloroplast, cell wall, peroxidase and symporter activities in response to viroid infection." Molecular plant pathology. 2012. Abstract
Conesa-Zamora P, García-Solano J, García-García F, et al. "Expression profiling shows differential molecular pathways and provides potential new diagnostic biomarkers for colorectal serrated adenocarcinoma." International journal of cancer. Journal international du cancer. 2012. Abstract
Heyn H, Vidal E, Sayols S, et al. "Whole-genome bisulfite DNA sequencing of a DNMT3B mutant patient." Epigenetics : official journal of the DNA Methylation Society. 2012;7(6):542-550. Abstract
García-Alonso L, Alonso R, Vidal E, et al. "Discovering the hidden sub-network component in a ranked list of genes or proteins derived from genomic experiments." Nucleic acids research. 2012;40:e158. Abstract
Bleda M, Tarraga J, De Maria A, et al. "CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources." Nucleic Acids Res.. 2012;40(Web Server issue):W609-14. Abstract
Bleda M, Medina I, Alonso R, De Maria A, Salavert F, Dopazo J. "Inferring the regulatory network behind a gene expression experiment." Nucleic Acids Res.. 2012;40(Web Server issue):W168-72. Abstract
Medina I, De Maria A, Bleda M, et al. "VARIANT: Command Line, Web service and Web interface for fast and accurate functional characterization of variants found by Next-Generation Sequencing." Nucleic Acids Res.. 2012;40(Web Server issue):W54-8. Abstract
De Baets G, Van Durme J, Reumers J, et al. "SNPeffect 4.0: on-line prediction of molecular and structural effects of protein-coding variants." Nucleic Acids Res.. 2012;40(Database issue):D935-9. Abstract  Download: PDF (1.95 MB)
Sundaram AYM, Kiron V, Dopazo J, Fernandes JMO. "Diversification of the expanded teleost-specific toll-like receptor family in Atlantic cod, Gadus morhua." BMC Evol. Biol.. 2012;12(1):256. Abstract
Fernández RM, Bleda M, Núñez-Torres R, et al. "Four new loci associations discovered by pathway-based and network analyses of the genome-wide variability profile of Hirschsprung's disease." Orphanet J Rare Dis. 2012;7(1):103. Abstract
Carbonell J, Alloza E, Arce P, et al. "A map of human microRNA variation uncovers unexpectedly high levels of variability." Genome Med. 2012;4(8):62. Abstract
Koziol A, Gonzalo P, Mota A, et al. "The protease MT1-MMP drives a combinatorial proteolytic program in activated endothelial cells." FASEB J.. 2012. Abstract
Fernandez P, Soria M, Blesa D, et al. "Development, Characterization and Experimental Validation of a Cultivated Sunflower (Helianthus annuus L.) Gene Expression Oligonucleotide Microarray." PLoS ONE. 2012;7(10):e45899. Abstract
Lavagnino N, Serra F, Arbiza L, Dopazo H, Hasson E. "Evolutionary Genomics of Genes Involved in Olfactory Behavior in the Drosophila melanogaster Species Group." Evol. Bioinform. Online. 2012;8:89-104. Abstract
Ventoso I, Kochetov A, Montaner D, Dopazo J, Santoyo J. "Extensive Translatome Remodeling during ER Stress Response in Mammalian Cells." PLoS ONE. 2012;7(5):e35915. Abstract
Jaime MDLA, Lopez-Llorca LV, Conesa A, et al. "Identification of yeast genes that confer resistance to chitosan oligosaccharide (COS) using chemogenomics." BMC Genomics. 2012;13:267. Abstract